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Data & Reporting

Scientific Pymoo

Multi-objective optimization framework. NSGA-II, NSGA-III, MOEA/D, Pareto fronts, constraint handling, benchmarks (ZDT, DTLZ), for engineering design and optimization problems.

10 minutes
Intermediate
Academic Research

Scientific Pyopenms

Complete mass spectrometry analysis platform. Use for proteomics workflows feature detection, peptide identification, protein quantification, and complex LC-MS/MS pipelines. Supports extensive file formats and algorithms. Best for proteomics, comp...

10 minutes
Intermediate
Academic Research

Scientific Pysam

Genomic file toolkit. Read/write SAM/BAM/CRAM alignments, VCF/BCF variants, FASTA/FASTQ sequences, extract regions, calculate coverage, for NGS data processing pipelines.

10 minutes
Intermediate
Academic Research

Scientific Pytdc

Therapeutics Data Commons. AI-ready drug discovery datasets (ADME, toxicity, DTI), benchmarks, scaffold splits, molecular oracles, for therapeutic ML and pharmacological prediction.

10 minutes
Intermediate
Developer Tools

Scientific Pytorch Lightning

Deep learning framework (PyTorch Lightning). Organize PyTorch code into LightningModules, configure Trainers for multi-GPU/TPU, implement data pipelines, callbacks, logging (W&B, TensorBoard), distributed training (DDP, FSDP, DeepSpeed), for scala...

15 minutes
Advanced
Research & Writing

Scientific Pyzotero

Interact with Zotero reference management libraries using the pyzotero Python client. Retrieve, create, update, and delete items, collections, tags, and attachments via the Zotero Web API v3. Use this skill when working with Zotero libraries progr...

5 minutes
Beginner
Developer Tools

Scientific Qiskit

IBM quantum computing framework. Use when targeting IBM Quantum hardware, working with Qiskit Runtime for production workloads, or needing IBM optimization tools. Best for IBM hardware execution, quantum error mitigation, and enterprise quantum co...

15 minutes
Advanced
Developer Tools

Scientific Qutip

Quantum physics simulation library for open quantum systems. Use when studying master equations, Lindblad dynamics, decoherence, quantum optics, or cavity QED. Best for physics research, open system dynamics, and educational simulations. NOT for c...

15 minutes
Advanced
Academic Research

Scientific Rdkit

Cheminformatics toolkit for fine-grained molecular control. SMILES/SDF parsing, descriptors (MW, LogP, TPSA), fingerprints, substructure search, 2D/3D generation, similarity, reactions. For standard workflows with simpler interface, use datamol (w...

10 minutes
Intermediate
Academic Research

Scientific Reactome Database

Query Reactome REST API for pathway analysis, enrichment, gene-pathway mapping, disease pathways, molecular interactions, expression analysis, for systems biology studies.

5 minutes
Beginner
Research & Writing

Scientific Research Grants

Write competitive research proposals for NSF, NIH, DOE, DARPA, and Taiwan NSTC. Agency-specific formatting, review criteria, budget preparation, broader impacts, significance statements, innovation narratives, and compliance with submission requir...

10 minutes
Intermediate
Research & Writing

Scientific Research Lookup

Look up current research information using the Parallel Chat API (primary) or Perplexity sonar-pro-search (academic paper searches). Automatically routes queries to the best backend. Use for finding papers, gathering research data, and verifying s...

5 minutes
Beginner
Academic Research

Scientific Rowan

Cloud-based quantum chemistry platform with Python API. Preferred for computational chemistry workflows including pKa prediction, geometry optimization, conformer searching, molecular property calculations, protein-ligand docking (AutoDock Vina), ...

10 minutes
Intermediate
Academic Research

Scientific Scanpy

Standard single-cell RNA-seq analysis pipeline. Use for QC, normalization, dimensionality reduction (PCA/UMAP/t-SNE), clustering, differential expression, and visualization. Best for exploratory scRNA-seq analysis with established workflows. For d...

10 minutes
Intermediate
Research & Writing

Scientific Scholar Evaluation

Systematically evaluate scholarly work using the ScholarEval framework, providing structured assessment across research quality dimensions including problem formulation, methodology, analysis, and writing with quantitative scoring and actionable f...

10 minutes
Intermediate
Research & Writing

Scientific Scientific Brainstorming

Creative research ideation and exploration. Use for open-ended brainstorming sessions, exploring interdisciplinary connections, challenging assumptions, or identifying research gaps. Best for early-stage research planning when you do not have spec...

10 minutes
Intermediate
Research & Writing

Scientific Scientific Critical Thinking

Evaluate scientific claims and evidence quality. Use for assessing experimental design validity, identifying biases and confounders, applying evidence grading frameworks (GRADE, Cochrane Risk of Bias), or teaching critical analysis. Best for under...

10 minutes
Intermediate
Data & Reporting

Scientific Scientific Schematics

Create publication-quality scientific diagrams using Nano Banana 2 AI with smart iterative refinement. Uses Gemini 3.1 Pro Preview for quality review. Only regenerates if quality is below threshold for your document type. Specialized in neural net...

10 minutes
Intermediate
Creative & Design

Scientific Scientific Slides

Build slide decks and presentations for research talks. Use this for making PowerPoint slides, conference presentations, seminar talks, research presentations, thesis defense slides, or any scientific talk. Provides slide structure, design templat...

10 minutes
Intermediate
Data & Reporting

Scientific Scientific Visualization

Meta-skill for publication-ready figures. Use when creating journal submission figures requiring multi-panel layouts, significance annotations, error bars, colorblind-safe palettes, and specific journal formatting (Nature, Science, Cell). Orchestr...

10 minutes
Intermediate
Research & Writing

Scientific Scientific Writing

Core skill for the deep research and writing tool. Write scientific manuscripts in full paragraphs (never bullet points). Use two-stage process with (1) section outlines with key points using research-lookup then (2) convert to flowing prose. IMRA...

10 minutes
Intermediate
Academic Research

Scientific Scikit Bio

Biological data toolkit. Sequence analysis, alignments, phylogenetic trees, diversity metrics (alpha/beta, UniFrac), ordination (PCoA), PERMANOVA, FASTA/Newick I/O, for microbiome analysis.

10 minutes
Intermediate
Data & Reporting

Scientific Scikit Learn

Machine learning in Python with scikit-learn. Use when working with supervised learning (classification, regression), unsupervised learning (clustering, dimensionality reduction), model evaluation, hyperparameter tuning, preprocessing, or building...

10 minutes
Intermediate
Academic Research

Scientific Scikit Survival

Comprehensive toolkit for survival analysis and time-to-event modeling in Python using scikit-survival. Use this skill when working with censored survival data, performing time-to-event analysis, fitting Cox models, Random Survival Forests, Gradie...

10 minutes
Intermediate

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Browse by Category

Personal Productivity

File Organization

Auto-rename, sort, deduplicate, and organize files

Personal Productivity

Note Management

Obsidian, Logseq, and note-taking workflows

Personal Productivity

Task Management

Todo lists, project tracking, and productivity

Personal Productivity

Productivity

Dashboards, automation, and workflow optimization

Personal Productivity

Knowledge Management

Second brain, research synthesis, and information organization

Career & Development

Career Development

Resume, interviews, job search, and career growth

Career & Development

Personal Development

Habits, journaling, and self-improvement

Career & Development

Education

Study guides, learning, and skill development

Research & Writing

Research & Writing

PDF analysis, academic research, and content creation

Research & Writing

Market Research

Competitor analysis, market sizing, and business planning

Finance & Accounting

Finance & Accounting

Expense tracking, invoicing, and financial analysis

Finance & Accounting

Finance

Budgets, expenses, and personal finance

Marketing & Content

Marketing & Content

Ad copy, SEO, social media, and content marketing

Legal & Compliance

Legal & Compliance

Contract review, legal research, and compliance

HR & Recruiting

HR & Recruiting

Resume screening, job descriptions, and HR workflows

Creative & Design

Creative & Design

Worldbuilding, creative writing, and game design

Creative & Design

Creative Writing

Fiction, worldbuilding, and storytelling assistance

Developer Tools

Developer Tools

Changelogs, documentation, and development workflows

Academic Research

Academic Research

Research workflows, literature review, manuscript review, and academic writing

Executive Strategy

Executive Strategy

CEO advisory, competitive intelligence, startup analysis, and strategic foresight

Sales & Revenue

Sales & Revenue

Pipeline management, customer success, revenue operations, and sales automation

Project Management

Project Management

Agile workflows, sprint planning, scrum ceremonies, and team coordination

Media Production

Media Production

Podcast workflows, video clip creation, content repurposing, and production management

Communications

Communications

Proposals, press releases, newsletters, speeches, and professional communication

Operations & Compliance

Operations & Compliance

SOPs, policy documentation, vendor evaluation, audits, and change management

Data & Reporting

Data & Reporting

Dashboard narratives, KPI analysis, survey reports, and data quality assessment

Customer Support

Customer Support

Ticket triage, escalation, KB articles, and response drafting

Science & Research

Bio Research

Bioinformatics, lab data processing, and scientific workflows

Product Management

Product Management

Feature specs, metrics review, roadmaps, and product strategy

Financial Services

Equity Research

Earnings analysis, sector overviews, coverage initiation, and investment thesis tracking

Financial Services

Investment Banking

Deal execution, pitch decks, CIMs, merger models, and buyer lists

Financial Services

Private Equity

Deal sourcing, due diligence, IC memos, portfolio monitoring, and value creation

Financial Services

Wealth Management

Client reports, financial planning, portfolio rebalancing, and tax optimization

Financial Services

Trading & Markets

Fixed income, FX, options, macro analysis, and quantitative trading strategies