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Academic Research

Scientific Opentrons Integration

Official Opentrons Protocol API for OT-2 and Flex robots. Use when writing protocols specifically for Opentrons hardware with full access to Protocol API v2 features. Best for production Opentrons protocols, official API compatibility. For multi-v...

10 minutes
Intermediate
Creative & Design

Scientific Paper 2 Web

This skill should be used when converting academic papers into promotional and presentation formats including interactive websites (Paper2Web), presentation videos (Paper2Video), and conference posters (Paper2Poster). Use this skill for tasks invo...

10 minutes
Intermediate
Developer Tools

Scientific Parallel Web

Search the web, extract URL content, and run deep research using the Parallel Chat API and Extract API. Use for ALL web searches, research queries, and general information gathering. Provides synthesized summaries with citations.

10 minutes
Intermediate
Academic Research

Scientific Pathml

Full-featured computational pathology toolkit. Use for advanced WSI analysis including multiplexed immunofluorescence (CODEX, Vectra), nucleus segmentation, tissue graph construction, and ML model training on pathology data. Supports 160+ slide fo...

10 minutes
Intermediate
Academic Research

Scientific Pdb Database

Access RCSB PDB for 3D protein/nucleic acid structures. Search by text/sequence/structure, download coordinates (PDB/mmCIF), retrieve metadata, for structural biology and drug discovery.

5 minutes
Beginner
Creative & Design

Scientific Pdf

Use this skill whenever the user wants to do anything with PDF files. This includes reading or extracting text/tables from PDFs, combining or merging multiple PDFs into one, splitting PDFs apart, rotating pages, adding watermarks, creating new PDF...

5 minutes
Beginner
Research & Writing

Scientific Peer Review

Structured manuscript/grant review with checklist-based evaluation. Use when writing formal peer reviews with specific criteria methodology assessment, statistical validity, reporting standards compliance (CONSORT/STROBE), and constructive feedbac...

10 minutes
Intermediate
Developer Tools

Scientific Pennylane

Hardware-agnostic quantum ML framework with automatic differentiation. Use when training quantum circuits via gradients, building hybrid quantum-classical models, or needing device portability across IBM/Google/Rigetti/IonQ. Best for variational a...

15 minutes
Advanced
Developer Tools

Scientific Perplexity Search

Perform AI-powered web searches with real-time information using Perplexity models via LiteLLM and OpenRouter. This skill should be used when conducting web searches for current information, finding recent scientific literature, getting grounded a...

5 minutes
Beginner
Academic Research

Scientific Phylogenetics

Build and analyze phylogenetic trees using MAFFT (multiple alignment), IQ-TREE 2 (maximum likelihood), and FastTree (fast NJ/ML). Visualize with ETE3 or FigTree. For evolutionary analysis, microbial genomics, viral phylodynamics, protein family an...

10 minutes
Intermediate
Data & Reporting

Scientific Plotly

Interactive visualization library. Use when you need hover info, zoom, pan, or web-embeddable charts. Best for dashboards, exploratory analysis, and presentations. For static publication figures use matplotlib or scientific-visualization.

5 minutes
Beginner
Data & Reporting

Scientific Polars

Fast in-memory DataFrame library for datasets that fit in RAM. Use when pandas is too slow but data still fits in memory. Lazy evaluation, parallel execution, Apache Arrow backend. Best for 1-100GB datasets, ETL pipelines, faster pandas replacemen...

10 minutes
Intermediate
Creative & Design

Scientific Pptx Posters

Create research posters using HTML/CSS that can be exported to PDF or PPTX. Use this skill ONLY when the user explicitly requests PowerPoint/PPTX poster format. For standard research posters, use latex-posters instead. This skill provides modern w...

10 minutes
Intermediate
Creative & Design

Scientific Pptx

'Use this skill any time a .pptx file is involved in any way — as input, output, or both. This includes: creating slide decks, pitch decks, or presentations; reading, parsing, or extracting text from any .pptx file (even if the extracted content w...

5 minutes
Beginner
Academic Research

Scientific Protocolsio Integration

Integration with protocols.io API for managing scientific protocols. This skill should be used when working with protocols.io to search, create, update, or publish protocols; manage protocol steps and materials; handle discussions and comments; or...

10 minutes
Intermediate
Academic Research

Scientific Pubchem Database

Query PubChem via PUG-REST API/PubChemPy (110M+ compounds). Search by name/CID/SMILES, retrieve properties, similarity/substructure searches, bioactivity, for cheminformatics.

5 minutes
Beginner
Academic Research

Scientific Pubmed Database

Direct REST API access to PubMed. Advanced Boolean/MeSH queries, E-utilities API, batch processing, citation management. For Python workflows, prefer biopython (Bio.Entrez). Use this for direct HTTP/REST work or custom API implementations.

5 minutes
Beginner
Developer Tools

Scientific Pufferlib

High-performance reinforcement learning framework optimized for speed and scale. Use when you need fast parallel training, vectorized environments, multi-agent systems, or integration with game environments (Atari, Procgen, NetHack). Achieves 2-10...

15 minutes
Advanced
Academic Research

Scientific Pydeseq2

Differential gene expression analysis (Python DESeq2). Identify DE genes from bulk RNA-seq counts, Wald tests, FDR correction, volcano/MA plots, for RNA-seq analysis.

10 minutes
Intermediate
Academic Research

Scientific Pydicom

Python library for working with DICOM (Digital Imaging and Communications in Medicine) files. Use this skill when reading, writing, or modifying medical imaging data in DICOM format, extracting pixel data from medical images (CT, MRI, X-ray, ultra...

10 minutes
Intermediate
Academic Research

Scientific Pyhealth

Comprehensive healthcare AI toolkit for developing, testing, and deploying machine learning models with clinical data. This skill should be used when working with electronic health records (EHR), clinical prediction tasks (mortality, readmission, ...

10 minutes
Intermediate
Academic Research

Scientific Pylabrobot

Vendor-agnostic lab automation framework. Use when controlling multiple equipment types (Hamilton, Tecan, Opentrons, plate readers, pumps) or needing unified programming across different vendors. Best for complex workflows, multi-vendor setups, si...

10 minutes
Intermediate
Developer Tools

Scientific Pymatgen

Materials science toolkit. Crystal structures (CIF, POSCAR), phase diagrams, band structure, DOS, Materials Project integration, format conversion, for computational materials science.

10 minutes
Intermediate
Data & Reporting

Scientific Pymc

Bayesian modeling with PyMC. Build hierarchical models, MCMC (NUTS), variational inference, LOO/WAIC comparison, posterior checks, for probabilistic programming and inference.

15 minutes
Advanced

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Personal Productivity

File Organization

Auto-rename, sort, deduplicate, and organize files

Personal Productivity

Note Management

Obsidian, Logseq, and note-taking workflows

Personal Productivity

Task Management

Todo lists, project tracking, and productivity

Personal Productivity

Productivity

Dashboards, automation, and workflow optimization

Personal Productivity

Knowledge Management

Second brain, research synthesis, and information organization

Career & Development

Career Development

Resume, interviews, job search, and career growth

Career & Development

Personal Development

Habits, journaling, and self-improvement

Career & Development

Education

Study guides, learning, and skill development

Research & Writing

Research & Writing

PDF analysis, academic research, and content creation

Research & Writing

Market Research

Competitor analysis, market sizing, and business planning

Finance & Accounting

Finance & Accounting

Expense tracking, invoicing, and financial analysis

Finance & Accounting

Finance

Budgets, expenses, and personal finance

Marketing & Content

Marketing & Content

Ad copy, SEO, social media, and content marketing

Legal & Compliance

Legal & Compliance

Contract review, legal research, and compliance

HR & Recruiting

HR & Recruiting

Resume screening, job descriptions, and HR workflows

Creative & Design

Creative & Design

Worldbuilding, creative writing, and game design

Creative & Design

Creative Writing

Fiction, worldbuilding, and storytelling assistance

Developer Tools

Developer Tools

Changelogs, documentation, and development workflows

Academic Research

Academic Research

Research workflows, literature review, manuscript review, and academic writing

Executive Strategy

Executive Strategy

CEO advisory, competitive intelligence, startup analysis, and strategic foresight

Sales & Revenue

Sales & Revenue

Pipeline management, customer success, revenue operations, and sales automation

Project Management

Project Management

Agile workflows, sprint planning, scrum ceremonies, and team coordination

Media Production

Media Production

Podcast workflows, video clip creation, content repurposing, and production management

Communications

Communications

Proposals, press releases, newsletters, speeches, and professional communication

Operations & Compliance

Operations & Compliance

SOPs, policy documentation, vendor evaluation, audits, and change management

Data & Reporting

Data & Reporting

Dashboard narratives, KPI analysis, survey reports, and data quality assessment

Customer Support

Customer Support

Ticket triage, escalation, KB articles, and response drafting

Science & Research

Bio Research

Bioinformatics, lab data processing, and scientific workflows

Product Management

Product Management

Feature specs, metrics review, roadmaps, and product strategy

Financial Services

Equity Research

Earnings analysis, sector overviews, coverage initiation, and investment thesis tracking

Financial Services

Investment Banking

Deal execution, pitch decks, CIMs, merger models, and buyer lists

Financial Services

Private Equity

Deal sourcing, due diligence, IC memos, portfolio monitoring, and value creation

Financial Services

Wealth Management

Client reports, financial planning, portfolio rebalancing, and tax optimization

Financial Services

Trading & Markets

Fixed income, FX, options, macro analysis, and quantitative trading strategies