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Scientific Sympy

Use this skill when working with symbolic mathematics in Python. This skill should be used for symbolic computation tasks including solving equations algebraically, performing calculus operations (derivatives, integrals, limits), manipulating alge...

10 minutes
By K-Dense AISource
#scientific#claude-code#sympy#visualization#database#protein#genomics#quantum-computing

You need to solve differential equations analytically, simplify algebraic expressions, or compute symbolic integrals — tasks that numerical methods can't do and hand calculation is error-prone. SymPy is Python's computer algebra system for exact symbolic mathematics, from calculus through linear algebra to code generation.

Who it's for: physicists deriving analytical solutions to differential equations and simplifying expressions, engineers performing symbolic analysis of control systems and circuit equations, mathematicians exploring algebraic structures and proving identities computationally, students verifying hand calculations and learning mathematical concepts interactively, scientists generating optimized numerical code from symbolic expressions

Example

"Solve our system of ODEs symbolically and generate optimized numerical code for simulation" → SymPy workflow: symbolic equation definition and algebraic simplification, analytical ODE solution with initial conditions, verification by substitution back into original equations, LaTeX rendering of mathematical expressions for publication, and automatic code generation for NumPy/C numerical implementation

CLAUDE.md Template

New here? 3-minute setup guide → | Already set up? Copy the template below.

# SymPy - Symbolic Mathematics in Python

## Overview

SymPy is a Python library for symbolic mathematics that enables exact computation using mathematical symbols rather than numerical approximations. This skill provides comprehensive guidance for performing symbolic algebra, calculus, linear algebra, equation solving, physics calculations, and code generation using SymPy.

## When to Use This Skill

Use this skill when:
- Solving equations symbolically (algebraic, differential, systems of equations)
- Performing calculus operations (derivatives, integrals, limits, series)
- Manipulating and simplifying algebraic expressions

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README.md

What This Does

SymPy is a Python library for symbolic mathematics that enables exact computation using mathematical symbols rather than numerical approximations. This skill provides comprehensive guidance for performing symbolic algebra, calculus, linear algebra, equation solving, physics calculations, and code generation using SymPy.


Quick Start

Step 1: Create a Project Folder

mkdir -p ~/Projects/sympy

Step 2: Download the Template

Click Download above, then:

mv ~/Downloads/CLAUDE.md ~/Projects/sympy/

Step 3: Start Claude Code

cd ~/Projects/sympy
claude

Core Capabilities

1. Symbolic Computation Basics

Creating symbols and expressions:

from sympy import symbols, Symbol
x, y, z = symbols('x y z')
expr = x**2 + 2*x + 1

# With assumptions
x = symbols('x', real=True, positive=True)
n = symbols('n', integer=True)

Simplification and manipulation:

from sympy import simplify, expand, factor, cancel
simplify(sin(x)**2 + cos(x)**2)  # Returns 1
expand((x + 1)**3)  # x**3 + 3*x**2 + 3*x + 1
factor(x**2 - 1)    # (x - 1)*(x + 1)

For detailed basics: See references/core-capabilities.md

2. Calculus

Derivatives:

from sympy import diff
diff(x**2, x)        # 2*x
diff(x**4, x, 3)     # 24*x (third derivative)
diff(x**2*y**3, x, y)  # 6*x*y**2 (partial derivatives)

Integrals:

from sympy import integrate, oo
integrate(x**2, x)              # x**3/3 (indefinite)
integrate(x**2, (x, 0, 1))      # 1/3 (definite)
integrate(exp(-x), (x, 0, oo))  # 1 (improper)

Limits and Series:

from sympy import limit, series
limit(sin(x)/x, x, 0)  # 1
series(exp(x), x, 0, 6)  # 1 + x + x**2/2 + x**3/6 + x**4/24 + x**5/120 + O(x**6)

For detailed calculus operations: See references/core-capabilities.md

3. Equation Solving

Algebraic equations:

from sympy import solveset, solve, Eq
solveset(x**2 - 4, x)  # {-2, 2}
solve(Eq(x**2, 4), x)  # [-2, 2]

Systems of equations:

from sympy import linsolve, nonlinsolve
linsolve([x + y - 2, x - y], x, y)  # {(1, 1)} (linear)
nonlinsolve([x**2 + y - 2, x + y**2 - 3], x, y)  # (nonlinear)

Differential equations:

from sympy import Function, dsolve, Derivative
f = symbols('f', cls=Function)
dsolve(Derivative(f(x), x) - f(x), f(x))  # Eq(f(x), C1*exp(x))

For detailed solving methods: See references/core-capabilities.md

4. Matrices and Linear Algebra

Matrix creation and operations:

from sympy import Matrix, eye, zeros
M = Matrix([[1, 2], [3, 4]])
M_inv = M**-1  # Inverse
M.det()        # Determinant
M.T            # Transpose

Eigenvalues and eigenvectors:

eigenvals = M.eigenvals()  # {eigenvalue: multiplicity}
eigenvects = M.eigenvects()  # [(eigenval, mult, [eigenvectors])]
P, D = M.diagonalize()  # M = P*D*P^-1

Solving linear systems:

A = Matrix([[1, 2], [3, 4]])
b = Matrix([5, 6])
x = A.solve(b)  # Solve Ax = b

For comprehensive linear algebra: See references/matrices-linear-algebra.md

5. Physics and Mechanics

Classical mechanics:

from sympy.physics.mechanics import dynamicsymbols, LagrangesMethod
from sympy import symbols

# Define system
q = dynamicsymbols('q')
m, g, l = symbols('m g l')

# Lagrangian (T - V)
L = m*(l*q.diff())**2/2 - m*g*l*(1 - cos(q))

# Apply Lagrange's method
LM = LagrangesMethod(L, [q])

Vector analysis:

from sympy.physics.vector import ReferenceFrame, dot, cross
N = ReferenceFrame('N')
v1 = 3*N.x + 4*N.y
v2 = 1*N.x + 2*N.z
dot(v1, v2)  # Dot product
cross(v1, v2)  # Cross product

Quantum mechanics:

from sympy.physics.quantum import Ket, Bra, Commutator
psi = Ket('psi')
A = Operator('A')
comm = Commutator(A, B).doit()

For detailed physics capabilities: See references/physics-mechanics.md

6. Advanced Mathematics

The skill includes comprehensive support for:

  • Geometry: 2D/3D analytic geometry, points, lines, circles, polygons, transformations
  • Number Theory: Primes, factorization, GCD/LCM, modular arithmetic, Diophantine equations
  • Combinatorics: Permutations, combinations, partitions, group theory
  • Logic and Sets: Boolean logic, set theory, finite and infinite sets
  • Statistics: Probability distributions, random variables, expectation, variance
  • Special Functions: Gamma, Bessel, orthogonal polynomials, hypergeometric functions
  • Polynomials: Polynomial algebra, roots, factorization, Groebner bases

For detailed advanced topics: See references/advanced-topics.md

7. Code Generation and Output

Convert to executable functions:

from sympy import lambdify
import numpy as np

expr = x**2 + 2*x + 1
f = lambdify(x, expr, 'numpy')  # Create NumPy function
x_vals = np.linspace(0, 10, 100)
y_vals = f(x_vals)  # Fast numerical evaluation

Generate C/Fortran code:

from sympy.utilities.codegen import codegen
[(c_name, c_code), (h_name, h_header)] = codegen(
    ('my_func', expr), 'C'
)

LaTeX output:

from sympy import latex
latex_str = latex(expr)  # Convert to LaTeX for documents

For comprehensive code generation: See references/code-generation-printing.md

Working with SymPy: Best Practices

1. Always Define Symbols First

from sympy import symbols
x, y, z = symbols('x y z')
# Now x, y, z can be used in expressions

2. Use Assumptions for Better Simplification

x = symbols('x', positive=True, real=True)
sqrt(x**2)  # Returns x (not Abs(x)) due to positive assumption

Common assumptions: real, positive, negative, integer, rational, complex, even, odd

3. Use Exact Arithmetic

from sympy import Rational, S
# Correct (exact):
expr = Rational(1, 2) * x
expr = S(1)/2 * x

# Incorrect (floating-point):
expr = 0.5 * x  # Creates approximate value

4. Numerical Evaluation When Needed

from sympy import pi, sqrt
result = sqrt(8) + pi
result.evalf()    # 5.96371554103586
result.evalf(50)  # 50 digits of precision

5. Convert to NumPy for Performance

# Slow for many evaluations:
for x_val in range(1000):
    result = expr.subs(x, x_val).evalf()

# Fast:
f = lambdify(x, expr, 'numpy')
results = f(np.arange(1000))

6. Use Appropriate Solvers

  • solveset: Algebraic equations (primary)
  • linsolve: Linear systems
  • nonlinsolve: Nonlinear systems
  • dsolve: Differential equations
  • solve: General purpose (legacy, but flexible)

Reference Files Structure

This skill uses modular reference files for different capabilities:

  1. core-capabilities.md: Symbols, algebra, calculus, simplification, equation solving

    • Load when: Basic symbolic computation, calculus, or solving equations
  2. matrices-linear-algebra.md: Matrix operations, eigenvalues, linear systems

    • Load when: Working with matrices or linear algebra problems
  3. physics-mechanics.md: Classical mechanics, quantum mechanics, vectors, units

    • Load when: Physics calculations or mechanics problems
  4. advanced-topics.md: Geometry, number theory, combinatorics, logic, statistics

    • Load when: Advanced mathematical topics beyond basic algebra and calculus
  5. code-generation-printing.md: Lambdify, codegen, LaTeX output, printing

    • Load when: Converting expressions to code or generating formatted output

Common Use Case Patterns

Pattern 1: Solve and Verify

from sympy import symbols, solve, simplify
x = symbols('x')

# Solve equation
equation = x**2 - 5*x + 6
solutions = solve(equation, x)  # [2, 3]

# Verify solutions
for sol in solutions:
    result = simplify(equation.subs(x, sol))
    assert result == 0

Pattern 2: Symbolic to Numeric Pipeline

# 1. Define symbolic problem
x, y = symbols('x y')
expr = sin(x) + cos(y)

# 2. Manipulate symbolically
simplified = simplify(expr)
derivative = diff(simplified, x)

# 3. Convert to numerical function
f = lambdify((x, y), derivative, 'numpy')

# 4. Evaluate numerically
results = f(x_data, y_data)

Pattern 3: Document Mathematical Results

# Compute result symbolically
integral_expr = Integral(x**2, (x, 0, 1))
result = integral_expr.doit()

# Generate documentation
print(f"LaTeX: {latex(integral_expr)} = {latex(result)}")
print(f"Pretty: {pretty(integral_expr)} = {pretty(result)}")
print(f"Numerical: {result.evalf()}")

Integration with Scientific Workflows

With NumPy

import numpy as np
from sympy import symbols, lambdify

x = symbols('x')
expr = x**2 + 2*x + 1

f = lambdify(x, expr, 'numpy')
x_array = np.linspace(-5, 5, 100)
y_array = f(x_array)

With Matplotlib

import matplotlib.pyplot as plt
import numpy as np
from sympy import symbols, lambdify, sin

x = symbols('x')
expr = sin(x) / x

f = lambdify(x, expr, 'numpy')
x_vals = np.linspace(-10, 10, 1000)
y_vals = f(x_vals)

plt.plot(x_vals, y_vals)
plt.show()

With SciPy

from scipy.optimize import fsolve
from sympy import symbols, lambdify

# Define equation symbolically
x = symbols('x')
equation = x**3 - 2*x - 5

# Convert to numerical function
f = lambdify(x, equation, 'numpy')

# Solve numerically with initial guess
solution = fsolve(f, 2)

Quick Reference: Most Common Functions

# Symbols
from sympy import symbols, Symbol
x, y = symbols('x y')

# Basic operations
from sympy import simplify, expand, factor, collect, cancel
from sympy import sqrt, exp, log, sin, cos, tan, pi, E, I, oo

# Calculus
from sympy import diff, integrate, limit, series, Derivative, Integral

# Solving
from sympy import solve, solveset, linsolve, nonlinsolve, dsolve

# Matrices
from sympy import Matrix, eye, zeros, ones, diag

# Logic and sets
from sympy import And, Or, Not, Implies, FiniteSet, Interval, Union

# Output
from sympy import latex, pprint, lambdify, init_printing

# Utilities
from sympy import evalf, N, nsimplify

Getting Started Examples

Example 1: Solve Quadratic Equation

from sympy import symbols, solve, sqrt
x = symbols('x')
solution = solve(x**2 - 5*x + 6, x)
# [2, 3]

Example 2: Calculate Derivative

from sympy import symbols, diff, sin
x = symbols('x')
f = sin(x**2)
df_dx = diff(f, x)
# 2*x*cos(x**2)

Example 3: Evaluate Integral

from sympy import symbols, integrate, exp
x = symbols('x')
integral = integrate(x * exp(-x**2), (x, 0, oo))
# 1/2

Example 4: Matrix Eigenvalues

from sympy import Matrix
M = Matrix([[1, 2], [2, 1]])
eigenvals = M.eigenvals()
# {3: 1, -1: 1}

Example 5: Generate Python Function

from sympy import symbols, lambdify
import numpy as np
x = symbols('x')
expr = x**2 + 2*x + 1
f = lambdify(x, expr, 'numpy')
f(np.array([1, 2, 3]))
# array([ 4,  9, 16])

Troubleshooting Common Issues

  1. "NameError: name 'x' is not defined"

    • Solution: Always define symbols using symbols() before use
  2. Unexpected numerical results

    • Issue: Using floating-point numbers like 0.5 instead of Rational(1, 2)
    • Solution: Use Rational() or S() for exact arithmetic
  3. Slow performance in loops

    • Issue: Using subs() and evalf() repeatedly
    • Solution: Use lambdify() to create a fast numerical function
  4. "Can't solve this equation"

    • Try different solvers: solve, solveset, nsolve (numerical)
    • Check if the equation is solvable algebraically
    • Use numerical methods if no closed-form solution exists
  5. Simplification not working as expected

    • Try different simplification functions: simplify, factor, expand, trigsimp
    • Add assumptions to symbols (e.g., positive=True)
    • Use simplify(expr, force=True) for aggressive simplification

Additional Resources


Tips

  • Read the docs: Check the official sympy documentation for latest API changes
  • Start simple: Begin with basic examples before tackling complex workflows
  • Save your work: Keep intermediate results in case of long-running analyses

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